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JakeOmatic Version 2.42
This fish survey analysis program is designed for fishery professionals to analyze data typically gathered during routine surveys. Common analyses such as the generation of length frequency histograms, population estimates, biomass estimates, relative weight, and relative stock density are all provided. The program is modular, with each module capable of analyzing commonly acquired fishery data. The three primary functions of the program are to analyze:
Fish telemetry analysis program
This is companion software for Chapter 14 in the AFS book "Analysis and Interpretation of Freshwater Fisheries Data." This program performs three basic functions that are commonly used in the analysis of fish telemetry data.
QStrap Version 3.1
Evaluating taxonomic relationships with microsatellite or AFLP non-diagnostic markers has generated a need for more complex analysis software to evaluate population structure with genotype data. One program that has seen increasing popularity for making these determinations is Program STRUCTURE. While the program easily generates average admixture coefficients (q) to characterize levels of admixture, it does not provide confidence intervals around those values to yield insight into the precision of the estimated q. QStrap uses the estimated q values from STRUCTURE runs to bootstrap confidence intervals around admixture values.
This fish survey analysis program is designed for fishery professionals to analyze data typically gathered during routine surveys. Common analyses such as the generation of length frequency histograms, population estimates, biomass estimates, relative weight, and relative stock density are all provided. The program is modular, with each module capable of analyzing commonly acquired fishery data. The three primary functions of the program are to analyze:
- Lake survey data (acquired with gill nets, electrofishing, traps, etc.)
- Stream survey data (2 pass removal population estimation)
- River/Lake survey data (mark-recapture population estimation)
Fish telemetry analysis program
This is companion software for Chapter 14 in the AFS book "Analysis and Interpretation of Freshwater Fisheries Data." This program performs three basic functions that are commonly used in the analysis of fish telemetry data.
- Calculates the distance from fish locations to the nearest shoreline.
- Determines if the distribution of fish locations are random (and provides a means to generate a distribution of the test statistic so that a P-value can be assessed).
- Evaluates if habitat selection is occurring, and whether fish are selecting for habitat types in a similar fashion.
- Calculates selection ratios for various habitat types.
QStrap Version 3.1
Evaluating taxonomic relationships with microsatellite or AFLP non-diagnostic markers has generated a need for more complex analysis software to evaluate population structure with genotype data. One program that has seen increasing popularity for making these determinations is Program STRUCTURE. While the program easily generates average admixture coefficients (q) to characterize levels of admixture, it does not provide confidence intervals around those values to yield insight into the precision of the estimated q. QStrap uses the estimated q values from STRUCTURE runs to bootstrap confidence intervals around admixture values.
Note
Each program comes with a manual or guide!
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